| Time |
Speaker |
Event |
| 8:00am |
|
Breakfast |
| 8:30am |
Andrea Califano |
Day 1 Welcome Remarks and Announcements |
| Keynote Presentation |
| 8:45am |
Eric Davidson |
How a Gene Regulatory Network (GRN) Explains Developmental Process and Provides a Guide To Its Evolutionary History |
| Comparative Systems Biology |
| 9:45am |
Trey Ideker |
Protein Network Comparative Genomics |
| 10:25am |
|
Coffee Break |
| 10:55am |
Manolis Kellis |
Regulatory Network Inference Using 12 Drosophila Genomes |
| 11:35am |
S Suthram |
Suthram S, Beyer A, and Ideker T: eQED: An efficient method for interpreting eQTL associations using protein networks. |
| 12:00am |
D Sahoo |
Sahoo D, Dill D, Gentles A, Tibshirani R, and Pleviritis S: Implication Networks from Large Gene-expression Datasets. |
| 12:25am |
|
Lunch |
| Model Organisms |
| 1:25pm |
Tim Hughes |
Cracking the Second Genetic Code |
| 2:05pm |
Ulrike Gaul |
Decoding Transcription Control in Drosophila Segmentation |
| 2:45pm |
Harmen Bussemaker |
Boorsma A, Lu XJ, Zakrzewska A, Snyder B, Klis F, and Bussemaker H: Inferring transcription factor co-modulation networks through regulon-based expression analysis |
| 3:10pm |
R Shachar |
Shachar R, Ungar L, Kupiec M, Ruppin E, and Sharan R: A Systems-level Approach to Mapping the Telomere-length Maintenance Gene Circuitry. |
| 3:35pm |
|
Coffee Break |
| Network Structure and Evolution |
| 4:05pm |
Naama Barkai |
Evolution of Gene Expression |
| 4:45pm |
Y Qi |
Qi Y, Suhail Y, and Bader J: Familiarity Breeds Contempt: A graph-diffusion kernel for analyzing enmity biological networks. |
| 5:10pm |
R Fleming |
Fleming R, Thiele I, Provan G, and Nasheuer HP : Integrated stoichiometric, thermodynamic & kinetic modelling of steady state metabolism. |
| 5:35pm |
|
Poster Session & Reception |
| Time |
Speaker |
Event |
| 8:30am |
|
Breakfast |
| 9:00am |
Andrea Califano |
Day 2 Welcome Remarks and Announcements |
| Keynote Presentation |
| 9:15am |
Eric Schadt |
An Integrative Biology Approach to Reconstructing Whole Gene Networks That Predict Complex System Behavior |
| Network Structure and Evolution |
| 10:15am |
Marc Vidal |
Interactome Networks |
| 10:55am |
|
Coffee Break |
| 11:25am |
Saeed Tavazoie |
Internal Representation of Environment in Biological Networks |
| 12:05pm |
Q Cheng |
Qiong Cheng, Dipendra Kaur, Robert Harrison and Alex Zelikovsky: Mapping and Filling Metabolic Pathways. |
| 12:30pm |
Y Lu |
Lu Y, Rosenfeld R, Simon I, Nau G, and Bar-Joseph Z: A Probabilistic Generative Model for GO Enrichment Analysis. |
| 12:55pm |
|
Lunch |
| Cancer Systems Biology |
| 1:55pm |
Arul Chinnaiyan |
Bioinformatics as an Engine for Oncology Discovery |
| 2:35pm |
Adolfo Ferrando |
Transcriptional Regulatory Networks Downstream of NOTCH1 in T-cell Acute Lymphoblastic Leukemia |
| 3:15pm |
|
Coffee Break |
| 3:45pm |
A Margolin |
Margolin AA, Palomero T, Sumazin P, Ferrando A, and Stolovitzky G: ChIP-on-chip significance analysis reveals large-scale binding and regulation by human transcription factor oncogenes. |
| 4:10pm |
M Schaub |
Schaub M, Bezdek A, Henzinger T, Radtke F, and Fisher J: Qualitative Crosstalk Analysis of Wnt and Notch Signaling in Mammalian Skin. |
| 4:35pm |
C Vogel |
Vogel C and Marcotte E: Using Mass Spectrometry to Analyze Post-Transcriptional Regulation. |
| 4:50pm |
V Chickarmane |
Chickarmane V and Peterson C: Modeling embryonic stem cell lineage determination. |
| 5:05pm |
Andrea Califano |
Closing Remarks |
